Publications

Rapid GPU-Based Pangenome Graph Layout

Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du, Simon Heumos, Andrea Guarracino, Giulia Guidi, Pjotr Prins, Erik Garrison, Zhiru Zhang.
[SC’24]. Accepted and to be shown!

Pangenome Graph Layout by Path-Guided Stochastic Gradient Descent

Simon Heumos, Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik Garrison.
[Bioinformatics]. Volume 40, Issue 7, July 2024.

NPS: A Framework for Accurate Program Sampling Using Graph Neural Network

Yuanwei Fang, Zihao Liu, Yanheng Lu, Jiawei Liu, Jiajie Li, Yi Jin, Jian Chen, Yenkuang Chen, Hongzhong Zheng, Yuan Xie.
arXiv:2304.08880, 2023.

Analysis and Optimization of GNN-Based Recommender Systems on Persistent Memory

Yuwei Hu, Jiajie Li, Zhongming Yu, Zhiru Zhang.
arXiv:2207.11918, 2022.

HeteroHalide: From Image Processing DSL to Efficient FPGA Acceleration

Jiajie Li, Yuze Chi, Jason Cong.
[FPGA’20]. 28th ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, 2020.